NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208298_1001370

Scaffold Ga0208298_1001370


Overview

Basic Information
Taxon OID3300025084 Open in IMG/M
Scaffold IDGa0208298_1001370 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8923
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027055Metagenome196Y
F063648Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0208298_100137018F027055GAGGMNTYQKIILAAALTFAFIWLSNDEFNQELKQAEQYNQDVCAGLIPDYQNINPTCEGE
Ga0208298_100137020F063648N/AMQTDGIESLVRVKTMGTTAANKNRAIRQEALREQLSNQGHVQHVTDIAKKLTDLDNELDSTQVQRLKSAADIKLKLIGKYLGDVKAIELSGDGGGDLVIKVADFKNS

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