Scaffold Ga0208298_1000106

Overview

Basic Information

• Taxon OID: 3300025084
• Scaffold ID: Ga0208298_1000106
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36442
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (42.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010682	Metagenome	300	Y
F015724	Metagenome	252	Y
F027502	Metagenome	194	Y
F039113	Metagenome	164	Y
F047028	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208298_100010610	F047028	GGA	MVNLSRGAADLVKTLFKGEEKERMISAGVVRTILADMIKLYFEHKTAVGKGVLVFNPVQPELSNYLTVKDLENDLAVAQESMNRELEELFELIIKVIQKEDSNELALIAMIQDSEVAVHLIDPVEANKNIDELSNGIIF
Ga0208298_100010621	F015724	GGCGG	MARRKGSDNFGFKSPNEKSPQSDFSFGGVRGASTTNQLNKIIPIKEKFRPNFNLKDFSVLYDYQYASMWTRWRRGYELYMYANQAYVGLNYSFRYFISGEAGVGAALPGICYMYPSMSQDMAMRMVVIRPRDSFNFLDFGFSIKSIIPTSTENVYAIELSSNFGAPISFFTGEVLSDRFNPDGTEKATYNSYVVIGVGNGPNALVPNFAPIFNTIFISLDTDNSWKVVDNSTLKAPADLPTPGDYFSTEMRFGCNCPDYLGREEFNLYKYNTKRQYPYTRVQDLKPGVYDVGADFTKEGQSREVDTRDYTGYTRDFGFIYIQKLLEIAEYRDNEKVYSDPNLIYWRPRWCKHIYASFWDLQNKFGKDVIEPTWLNQPSDEPMDGAYLNQFYTNMEKQTSFKCREKRLSWWEKFSPSRNTTPVHMLYPDMNPTVTKVLNFDTLNSGVTNPLNPSGFEMFDIDQYNPFLPPDPETTPRIDGGQYFNGVLVSGASLIYDGGSYVNGGLTPYPSFPSITNGGTY
Ga0208298_100010630	F010682	GAG	MVYIPTSNWKYDKSLYHSIQSGPQRTGDNLDRTDTYLTFSSGYVMPNGVQQTYESVSSEGADFGVIRVGPPNISGYFNTEWKAVPPAISGYWTNYDNVNPHASGLLDSYVGFRAQGLYKTANSTVQTAIGPQPGLRNFGSFTWYGEQVPDNQIYSPFQTPRSNDNSSEGGGITGGGITQPRLRAPALTNPTNDTTGSRAAWVYHYPIYCQSLVETRYSSAPGQMGSPTRNSYRGKSSRYVPNYGSVYGKLGEGVRNMVRTFSPGVNSSNQKGI
Ga0208298_100010648	F027502	N/A	MSENARSKQLRERDVRKLSPELDAGTFMQLYMESNFPQTSSMPSKGQLEFGIDGNQAKNDLKLMKKPLSGTQYDNPGGF
Ga0208298_10001069	F039113	N/A	MDIIKEIKQIKVAVESIDVSLQLLASENTGTRRTSGFVSKRVVAQRLNIPSVTLDKLIHQGIVSDGKTGLIEGTHFCKIDPVEKNSSKFLYDIHSIIHSAWNNFKNG