Scaffold Ga0208791_1080824

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208791_1080824

Scaffold Ga0208791_1080824

Overview

Basic Information
Taxon OID	3300025083 Open in IMG/M
Scaffold ID	Ga0208791_1080824 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	526
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.205	Long. (^o)	-77.515	Alt. (m)		Depth (m)	20
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030558	Metagenome	185	N
F070562	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208791_10808241	F070562	GGA	MFKELCATLFLLCNPLLNGFSFNYDGNPQDQFVQGIAECTVLNNAVIEP
Ga0208791_10808242	F030558	AGGA	MGRDKQKIGDVNELKATIKFLKEGYWVFRNVSPKGPIDMVIVNEETGEIRLIDVKTTNYRQSWKPGTKIHRQRTPEQVKLKVEYIFMEKDDDV

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