NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208791_1072583

Scaffold Ga0208791_1072583


Overview

Basic Information
Taxon OID3300025083 Open in IMG/M
Scaffold IDGa0208791_1072583 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)566
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.205Long. (o)-77.515Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008719Metagenome / Metatranscriptome329Y
F075075Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0208791_10725831F075075GGAGMHPTYLGWQVDWPVFIKIPVSSAGKNWKRGEHFNWLEQSIDPDKVASLYTSGYLYHNKELEVQNKVGDRLSEFSSKQLDTLVSLLNVIVKDRTSSTSEYNIKKCRKSKIDD
Ga0208791_10725832F008719N/AVESYSDDALKRQQVAEHIQVKMSYDMKVVGADLGYFFNAIVQ

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