Scaffold Ga0208791_1027275

Overview

Basic Information

• Taxon OID: 3300025083
• Scaffold ID: Ga0208791_1027275
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1103
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004523	Metagenome	434	Y
F005491	Metagenome / Metatranscriptome	399	Y
F008022	Metagenome	340	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208791_10272751	F004523	N/A	DRQRKNGTTVYELPISQVWQTLDPKPLRFATYTTGYVRNISESNSSCYQINKTRKVSTRTSGYAYDTVERIMIPHWEDRIIYLAKFIIKNYYQKTTYIMNDYVMKCLKEAYYEQNKTGLPFDEDDKFFCSTDDVQVIVNGHRYNLS
Ga0208791_10272752	F005491	N/A	MSAFYKDTRFNGKLVRLEDVIDEIYDRALETIDESLYELLNDKDDDEFYEDYKEAFPLIVEKLQKFHDGED
Ga0208791_10272753	F008022	N/A	MTTTELQAKIEALQAALETKAQEQNAYRGQIDTLKKQLADLNKPKLTMKQFDELTTFVECGIEEFDFDDLDNYSIDYGIDYDNRITCESFCFDNVDELA