Scaffold Ga0208791_1012481

Overview

Basic Information

• Taxon OID: 3300025083
• Scaffold ID: Ga0208791_1012481
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1942
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026712	Metagenome / Metatranscriptome	197	Y
F031255	Metagenome / Metatranscriptome	183	N
F077286	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208791_10124812	F077286	AGGAG	MNKWKYTVEWEGDVTNYKQDFETLEEARIAMIMHHKRNAVIRVIKIDDYA
Ga0208791_10124813	F031255	N/A	MIKYFNEVVAELQSKGTIFGAEYRKKNGELTKINGRFGVSKFVKGTGTSNPNVLTVWDNNRKRYTSLIPDNIVRLTTNKRRYLKTDEFLIEQL
Ga0208791_10124817	F026712	N/A	MKQTFYPTDSEQQFLMDIVINEFAHRQLAMDNYNVQEVAYRQAISDGAMRTDNYFAL