Scaffold Ga0208791_1009585

Overview

Basic Information

• Taxon OID: 3300025083
• Scaffold ID: Ga0208791_1009585
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2333
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000713	Metagenome / Metatranscriptome	925	Y
F030440	Metagenome / Metatranscriptome	185	N
F058965	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208791_10095851	F058965	N/A	TGNPLIGAAAQGGAELISKVNKSQGTQQGQSVAVSQATQTRPAETQASGSTNGGGQFLGYSDMGGSGFESVYSGATPAMQAQPAGLPAIVSGGVGISRGLYGMLFGGAVGAAPMIIDQFTGQPKKLRVTRKLQRDVKQAVMLLGPEAVADQLGVGLDVVIYIMQKKIRNDGSYVTKAAVRKTRQTVRKMKSMCDLYDDLRPAAKRRPPMRRAAATRITNVK
Ga0208791_10095852	F000713	AGGA	MPLVKKNITLAAGATSDQILQGTTYEYVDPGTRLVVAAAESTGTYSGNLVMNFTVNNAEFSRDVAISEKVTGEAFGWNNTGYVLNDMITTGQVRNRPVVTFTNNDASSVDLEVAIFIGG
Ga0208791_10095854	F030440	N/A	MQISCMEFAIYTLIACNLLAFGGFAYTRARLGKLERALGDLDWEALAGLVGDVAVLKRTIQKLNMRLNGMETADPMAALAKLPQLQQNVTPMAAVKKRGG