Scaffold Ga0208791_1003953

Overview

Basic Information

• Taxon OID: 3300025083
• Scaffold ID: Ga0208791_1003953
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4368
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014903	Metagenome / Metatranscriptome	259	Y
F050478	Metagenome	145	N
F069323	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208791_10039531	F069323	GAGG	MKEKIITVKLQERNLTWMKNNYRKSKQGVNSLFEYGGIDIREVHAIADLLYHLNEAF
Ga0208791_100395310	F014903	GGAG	MENDITNIRYVEMTYDHTITFDIDEIANANNFIPSDIEEVECGKWAKLNITLKDGRVIEEDGCFYNSLPDLKWAEREAFYDGSYNELV
Ga0208791_100395314	F050478	GAGG	MKIKRVSRYTFDKDGHPINKRGKRLTNKITATFKHSPNNAGSRVDWIHFEKEEVIK