Scaffold Ga0208791_1003209

Overview

Basic Information

• Taxon OID: 3300025083
• Scaffold ID: Ga0208791_1003209
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5086
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024920	Metagenome	204	Y
F070650	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208791_100320913	F070650	GGAGG	MEVKLQMGAKTFACLVFENIFRSGRNTMDYAYGVNVDSIKMYTDFTSDIILEPYEAEKLHRKLEDLVPKVTVGLRTQLKKQMKEITLQLGEAI
Ga0208791_10032099	F024920	AGGAG	MIVELLDKYHVDDFDDLLIKIIQHMKEQKETRQDNEDDS