Scaffold Ga0208791_1003006

Overview

Basic Information

• Taxon OID: 3300025083
• Scaffold ID: Ga0208791_1003006
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5337
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006845	Metagenome / Metatranscriptome	363	Y
F012117	Metagenome / Metatranscriptome	283	N
F059861	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208791_10030062	F006845	N/A	MDLNSYLLQEGFEEFCRESYERITLACEILGIVNDEDYEGFKERNYAKLETDYLNSIDRTIH
Ga0208791_10030063	F012117	GGAG	MVDILGGMSSSNESQQVYLAFKTSHQQFFANGETPVEFQYLQLDPSTFKSGWGRYTKADGFEYSWDDKFGVVAPKPADDYKRAFSAWVFPQGAQHAFLWQRFTYAESSAFNTILGSFWNQMDSSSANLPVVKFEGSKPIQVGMGNSSELSFSFAKFAPRTAEFVIPQWYIDQEAPVDDTFKDPNAGLADKVQEMVDKNELSDDDIPF
Ga0208791_10030069	F059861	N/A	MSKFHQEDLPYGEAGEKFVLNIVNRKHPMAYKMEGYFIEYDIMIPEIDKTVEVKRDKHTDRTGNAFIETYCNKIESGINASTADYWAYLTKTMLYWIKSNDLKICILENNIPEGKNYMVDGKIIDAYLIPIDIFKNYCMRIDTLTEEQLCQLN