Scaffold Ga0208791_1001828

Overview

Basic Information

• Taxon OID: 3300025083
• Scaffold ID: Ga0208791_1001828
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7593
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052535	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208791_100182815	F052535	N/A	MGYDLVCYLCVMKRPYEVLALDDSNTPVRIATIIENSPAKAKATGQKLAKSLRQRFHTVQLIKE