Scaffold Ga0208791_1001219

Overview

Basic Information

• Taxon OID: 3300025083
• Scaffold ID: Ga0208791_1001219
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9700
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003225	Metagenome / Metatranscriptome	499	Y
F008883	Metagenome / Metatranscriptome	326	Y
F042908	Metagenome	157	N
F056585	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208791_10012191	F056585	GGAG	MIRETWEMWADEYQEYYEDETPVYPDDMEEFKKEEQK
Ga0208791_100121910	F042908	N/A	MKFSHGDALTAGSANHVLAVPAGHDAIVTYLFISNTGSNKSISAKWVHGGVDIDFIAGKNVSADDFLEFGGQHGEFLVAKEGDTITLTPEAGSTFVSIVSFELIPATPRLNF
Ga0208791_100121916	F003225	GAG	MTTELETYFNNYNELFNSEGFKQLIQELSTNAQQLADIQTVKNEEDLFYRKGQVAAFATIINLQGTIEAARDQAEAEEEGPVDV
Ga0208791_10012193	F008883	GAGG	MNFGHYTIWYNHEAHVWDIYDGRKGFKYPEYTINNYSRLLCTLRDKLSRFDTDRNRGLFYRFTRFIRRLRNV