NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208156_1021073

Scaffold Ga0208156_1021073


Overview

Basic Information
Taxon OID3300025082 Open in IMG/M
Scaffold IDGa0208156_1021073 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1464
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)275
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031532Metagenome182N
F043447Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0208156_10210732F031532AGGAGMSSRITKEKVKTFLNLRFRKEPLMMYDDTLDVAVEVIQDFLNCDPMDVGKLQANTYDTIYNIEREIK
Ga0208156_10210734F043447N/AMKIKNQVQVDYIRSTRDKPPETNLARAVLSRAFLDSMGYLNPQSSHGRGELAYLKNSARKFISAKKKIFREWCDIADADPDYVAELYDDLTYHMNNGKLKNLRIKVVIEKLVDRI

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