Scaffold Ga0208156_1020894

Overview

Basic Information

• Taxon OID: 3300025082
• Scaffold ID: Ga0208156_1020894
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1472
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 275

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001034	Metagenome / Metatranscriptome	798	Y
F008820	Metagenome / Metatranscriptome	327	Y
F045194	Metagenome	153	N
F103407	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208156_10208941	F103407	GGAGG	MSLFEKLAHMVGHRKVPVPAMPGFSVPRVSFGSKATLKIIFFAVLVSLGAVGTGMYFTIKDVVHSSWNWPDSGAAYYASNDGLGKMGEQLPLNADGTESQTLEIRMADGSRMESL
Ga0208156_10208942	F045194	GGA	MADDEEQKPERRDENRVQMTSGDIVRLIIAAPVIFTWLFLGSRIIISATNSETVLNNIEPLLTVLSILTIPCVGILQSLFSSGGDKK
Ga0208156_10208943	F001034	AGAAGG	MLASQQVYEDAQYQSTTPIGPQAPIPPGVHDIELSWDRRKGYMRVIIEGQKYWFKEYLGKAQVLGCDNKRGRINLRAIAQINGETLTMWRDPDAPPHEEVEGVRREKTHNRLCYRRMTEEWRLRDERKDWDDPNALVFTKSYKGDLNAEWHANDSIAHIYHNGYAIIDENDVAHLYDTEL
Ga0208156_10208944	F008820	N/A	MADLTQYLTQKYTKMIAEITADLGKTADDLANAQNIIRALKNPDMMVNGVSLTLDMVQVMENGDIRLLPPPPAPITETCVQAPEPEKNGKKPEKELANAS