NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208156_1018963

Scaffold Ga0208156_1018963


Overview

Basic Information
Taxon OID3300025082 Open in IMG/M
Scaffold IDGa0208156_1018963 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1567
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)275
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F046426Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0208156_10189633F046426GGAGMKLRLKLGIVLVCLTFSMGCSILPELVAPAANFAIGFYDHDDYYSKECLWYDEVKLNEKTKKWLMESNPPEVVSKDLAVVSRNNDIYKEVCEREKSMLDKVEDKVRRLTDE
Ga0208156_10189634F002078AGGAGMEMFMNQGWFQIAGEIVLMFTVITGALPDRWVQKVPILGTMWPMFNWLAGNIFNNINHPKGMAAKAEVEKEIDEAKAKVRDRVGMPDVLDGM

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