Scaffold Ga0208156_1002927

Overview

Basic Information

• Taxon OID: 3300025082
• Scaffold ID: Ga0208156_1002927
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4960
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 275

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072515	Metagenome	121	Y
F092719	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208156_10029271	F072515	N/A	REILDDEGVTNNWLIERYKTIADLAESDTAKLRSLDSLAKISGLFDTEEKKSEQVTVWAGFKPEVLAEVEKHGKPELVAHAEREE
Ga0208156_10029272	F092719	GGAGG	MANQNLSPMQNEKNDDDVKGFEDPCPVCKEELYLDSEFTQRIGLIDDLDKVIGWICPHCRTEYDNDTKIVRFLGGDDIGGEA