Scaffold Ga0208156_1001291

Overview

Basic Information

• Taxon OID: 3300025082
• Scaffold ID: Ga0208156_1001291
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8165
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 275

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019113	Metagenome	231	Y
F034892	Metagenome	173	Y
F042854	Metagenome	157	Y
F077180	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208156_10012911	F077180	GGAG	VKRGDLLRYEVDGSLWLVEWADDKWVKIVGVTHPLLIEETGLEVVS
Ga0208156_100129117	F042854	GGAG	LKKFDRELERYTRNRMRELRGDLQPQWAQDPFIGVYTSRRIREMHLEHQTAQRKIDLDNRKLGSYTVSTMGDHNGES
Ga0208156_100129118	F019113	N/A	VSETFEVGDLVRDTLNNGRGNYGLGVVVATDSGGLLEEEVRVLGNEQDYADQDIPGKRYDVYFNKFERTITFHGDYLEKV
Ga0208156_100129121	F034892	AGCAG	MEIKVGDLVRVKGKDWIEKPLGIVTEIKHLIHDQSGTEYTAVSAVVGGNSFTFPDNAFELVNSVESEKN