Scaffold Ga0208156_1000125

Overview

Basic Information

• Taxon OID: 3300025082
• Scaffold ID: Ga0208156_1000125
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39079
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 275

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020443	Metagenome	224	Y
F097140	Metagenome	104	N
F100973	Metagenome	102	N
F104979	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208156_100012517	F100973	GGAGG	MAPRLPRDPYKIGSFSELRSHYTEAIKQLDECKRMKGATNEVLRTTADKVRGAKDEAKKAHREVVALTKREHAKSKEKSAAAYATTAATTLIISYQIVEVSGGWGKWEPVFQHEATIGVLQVLIGSILAFAMRPLQ
Ga0208156_100012518	F020443	GAGG	MKDLKVKLGFGKKEIAKTGKGAVVGGAGALAYSIISGMGYMPDAFTSADVVPYVVAGLAAAINFVRQFIVDND
Ga0208156_100012520	F097140	N/A	VEDEQKSHTPQLNDSQCELIKGIHMSNLWEHPNIARAEFSNPDKMDANLVHALQDTRDWIKRPMTFTKSSGGVIYHPHGDAVDLWSTTHAKASLHKSDCDHDASARSNTTVRLLGALGLAQDWDCGVETPEELFEVFLTLERMNTWSGIGLYPHWHRPGFHTDLRSKTHPSTRARWFRIQDGTYFPLTWVAWKTHVMN
Ga0208156_100012545	F104979	N/A	MTSLVNDRALDSARVVSMLIYEGKTAGEIAKALSTTRTKIIEHLESSKVQSMIDEAQEKRHALVAHIPIANFATRLSRLEQIYKANESMEDYTMCLKALSAAREETKLVRVETSDNSKPQFIVNISSFKGTESPAEAVEVAEAVERTTRHLPSATAS