Scaffold Ga0207890_1008588

Overview

Basic Information

• Taxon OID: 3300025079
• Scaffold ID: Ga0207890_1008588
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-48 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2215
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0005
  • Long. (^o): -144.9964

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020604	Metagenome	223	Y
F067196	Metagenome	126	N
F069345	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207890_10085883	F069345	GAG	MILFTFLAKQKMMVDCPECSHSDRKGEVEHEQFEMTSYGVYEPCGVWKTCENCSGSGEIEAD
Ga0207890_10085886	F067196	GAGG	MPKFNNIEEKQKFFRMALRKLDTGLPNEASPDLIKFFVLHVITAYDHDDCWDDVKGFIDFALKEKSQFDSARQAVEDADNMLDAITSSKDK
Ga0207890_10085888	F020604	N/A	QWRRDRCQARLDAFNALEADQQAAIRQTFKDLEAAQTTLSECQDLWLSDSKELDHALWHLRSLAIFDPENVDL