Scaffold Ga0207890_1007179

Overview

Basic Information

• Taxon OID: 3300025079
• Scaffold ID: Ga0207890_1007179
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-48 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2476
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0005
  • Long. (^o): -144.9964

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026151	Metagenome	199	Y
F026711	Metagenome	197	Y
F052889	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207890_10071792	F052889	AGGAG	MQSKTDHIYSTAIAYACFKSGAKRVDDNLLKSMFRDLCLLSDEYAFDYKQELKEILKEG
Ga0207890_10071794	F026151	AGGA	MKKNLPTQDNVKWLMEQTLRNILSCVGGVYYNRYKIKLERKKDEKKNKSI
Ga0207890_10071795	F026711	AGGA	MKKRISQYDAQMVADWFNGSNLVHSSIASNEKIKKLFEQSEKLRQKAHKIIVNDNTWKFKWKSKNLRQLKVIYNYENKP