Scaffold Ga0207890_1002424

Overview

Basic Information

• Taxon OID: 3300025079
• Scaffold ID: Ga0207890_1002424
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-48 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4672
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0005
  • Long. (^o): -144.9964

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021104	Metagenome	220	N
F051148	Metagenome	144	Y
F057429	Metagenome	136	Y
F077385	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207890_100242410	F077385	N/A	MGGRIHPGVLMEKYVWQWFWGHDYLNNKVKNIYFGPRLDWMKVFKERKNDKRKVKKIRKN
Ga0207890_100242412	F057429	N/A	MKSLQMNAKVCVEYDSKSVRHGPEFLCSECDSWFKKLIYWTSKKFNPDQKYQMVFLCGPQCATEKYERESTSNVS
Ga0207890_100242413	F021104	N/A	KNYPKDWEDACDLDDKIRHGLKNTETELFLHKSAKPLRSINFLEPKKQQSLFGETFDEEFADECEGLCGV
Ga0207890_10024246	F051148	AGGCGG	MNYERGLLAFLMVLLIICCLVSTKTQARNDYLGSSNSSCERGRVELYTELRGTDGKDIYQDGDGDPNNSYTSYDDDVNGTIGLRFSWPLQSTCNNETIELLQENDKLRQELELLANCAKYKDLELGPEFATVREMCKGVNKKAENAE