Scaffold Ga0207890_1002110

Overview

Basic Information

• Taxon OID: 3300025079
• Scaffold ID: Ga0207890_1002110
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-48 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5043
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0005
  • Long. (^o): -144.9964

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015734	Metagenome / Metatranscriptome	252	Y
F019756	Metagenome / Metatranscriptome	228	Y
F050011	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207890_10021104	F050011	N/A	MTTSLENFSEYIKPYLLETIAIKTDKKIIRKGKLKIFQVKQHYARLTLEDGERTRIYEVPYPYDISKEGTVTTLNYKTKMFLNIQDLDLQVKLLDSTKKSKLYDELVYILPLRDVD
Ga0207890_10021105	F015734	N/A	VIVQRSALDSILLNNVCDVRFVRRDPRPGDGATRRMLCTKSYDLLNSVNGRTTLNYRPPKGPKKINEAADNLLVVWDVLMQNYRTINCNQVDLIKEIPASEFWPYFNENIYPMSAEQKAGYLNS
Ga0207890_10021106	F019756	N/A	MPAHESIDRLPSQKHLIDLSTHSEGDIGLTDDFELNFIFDDILLVEYVDENDEGEVQRNGIFVPTNAVTKAWRKARVILTGPKVEYAKVGDVVIFPNNLGVTISNLDINGKRLKKGIFLNEDRLFGICTLKE