Scaffold Ga0208668_1021820

Overview

Basic Information

• Taxon OID: 3300025078
• Scaffold ID: Ga0208668_1021820
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1293
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 250

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007085	Metagenome	358	Y
F065108	Metagenome	128	N
F099865	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208668_10218201	F099865	N/A	DKSSYRHNDDKITLEDCNDQIRTWAKSLAEREIEKRPEGKQLAKLKGIKRVALDTIMESEAPATLIESLNKVMTKFIGVSWHEEPKAIEHN
Ga0208668_10218203	F007085	GAGG	MKLLKLIVGFIFAMLGLIIAVYSIHHVVGLLLFFGGFYTTLINLPHYKERLL
Ga0208668_10218206	F065108	GGAGG	MGKLIKYKVIRWQTDGTEEIWEASSKPTFQQMYKLINCTTIERQSG