Scaffold Ga0208668_1016684

Overview

Basic Information

• Taxon OID: 3300025078
• Scaffold ID: Ga0208668_1016684
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1522
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED123 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 250

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002601	Metagenome / Metatranscriptome	544	Y
F021117	Metagenome	220	Y
F072243	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208668_10166842	F002601	AGGAG	MIKLIVFSVLLNTGEIQAVIPDDTKIERRRRNGKGKRDRRRGGSGLR
Ga0208668_10166844	F072243	AGGAG	MGLLDFLTKPVNPHRQNFDEYDIFLAERNVKNVSYKDWYNYDDAYAYYRETGIDPYDNKSKHWNSKFKHPLSPERFIQDKENNKWFDTIENKFVNEEKVAQQAIERLDYLESMPLNGNKK
Ga0208668_10166845	F021117	GGA	MEIKRDDMFQATRFLNLIVGIMNIYLYTLGGGYHLLGIAMLNVGVWAFTRGIHK