Scaffold Ga0208668_1012412

Overview

Basic Information

• Taxon OID: 3300025078
• Scaffold ID: Ga0208668_1012412
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1828
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 250

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027156	Metagenome	195	Y
F048570	Metagenome	148	Y
F084099	Metagenome	112	Y
F090254	Metagenome	108	Y
F106167	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208668_10124121	F090254	AGGAGG	MSIPETNYSAREILEIVDGGEFVIILREKYLVVWDGGSVVNIHDLTDPAKLSDYQVLPMFATRCMLTVHDAIDDYFMELDRDKEDECLTTAPIRVIVETESNDPPEVN
Ga0208668_10124122	F106167	GGAG	VEIGDIVKLHINPSVDWMHKYLEETFEVMDFPTETGVRVKMVGTDPEWHWIIGKSDFKIAKEEDE
Ga0208668_10124124	F084099	GAGG	MKIGDIVTMKQALTPERYGLGLIQKIVEATYVFPHCEPRLVYHILWPDGGISNQYDNEIVLVSRVE
Ga0208668_10124126	F048570	GGAGG	VKIGDLVRCRPRSEWENYDEWLGLIIGEPASGVTVAVQWVCSDGRGAVETVNHTLEELWVVNESR
Ga0208668_10124128	F027156	GGAG	MIPKVGQLLRWYDNPLYCADDTELENDVGIVKEVQLEGENFFGNDEYQYVVIIDWCKGPHHSYHDQEEWEESIQTNEIVVV