Scaffold Ga0208668_1003986

Overview

Basic Information

• Taxon OID: 3300025078
• Scaffold ID: Ga0208668_1003986
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3557
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 250

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014803	Metagenome	260	Y
F015660	Metagenome	253	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208668_10039865	F014803	GGAGG	MNQEQKKIVKRINQAYSKLYILSNITWTPYRDELFKINKQDEKKHRCGDWSSHHNDAASISDCARLFTVKHIAESLLNPNKWQVKDLLNIKKSCLYAQSVVNNYKDRIKKAWIDENIKYLAELDYVSLVNWSLHQELEKKHKEVA
Ga0208668_10039866	F015660	N/A	MPNTTKYSKELIDNIMKDLAAGISIKASLKTHNLSWECFRKWLIDERKYPSLRAKYSQAKQDGIEYSLSDAQTLITEAVKDSKHKEKTDLGSTHLVKEFISLAKWRAEKLAPKVYGKKDNLTLLGDKNSPLVVKWNK