Scaffold Ga0208668_1002933

Overview

Basic Information

• Taxon OID: 3300025078
• Scaffold ID: Ga0208668_1002933
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4234
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 250

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025149	Metagenome / Metatranscriptome	203	Y
F026403	Metagenome / Metatranscriptome	198	Y
F035486	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208668_10029332	F025149	AGGAG	MVAKKKPAEKQTFLRPEHRLELLEAINKAKDVIDSNIECGSAMCDLVHDAQHKLNVVARKLGYKQENWYSNFTL
Ga0208668_10029337	F035486	AGGAGG	VLQRCSDPNCNRYATIYHPAPYCDRDWARRYSTQFDEAVAEELKLPTPSVPYRRYLEWQLKNRGLAKKDGETKEENWERCKARARKSKLLSQ
Ga0208668_10029338	F026403	AGG	MKGSFGLNRLVRKAQNLERKLEYDLVKTGATSIETYKNRCLGYIERLGMLTNVSMAEKKDAARKMYKVYFNLQDFEGAEQETDMEVSLESLLPELDMAIVESYVADARTGGLGFSTVNALMLAEGLSAPKNPLWRTENEVKAGVGKEGSALIGLGFDRSLYREPQSVVQWREEMKEQKEEVLRATKMQ