Scaffold Ga0208668_1002688

Overview

Basic Information

• Taxon OID: 3300025078
• Scaffold ID: Ga0208668_1002688
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4431
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 250

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042023	Metagenome / Metatranscriptome	159	Y
F043614	Metagenome / Metatranscriptome	156	Y
F080506	Metagenome / Metatranscriptome	115	N
F087296	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208668_100268811	F087296	N/A	MITLTKAARVAQEVNEEEANVEYSEWVLKWQLLESDMMFNVPWKKLYERVGLTKTMSGPSTCRWSIAEKKFWAEYLRFVTEVYHYGGTLDELKRRITDQRIYNSRTDKVRRF
Ga0208668_100268812	F080506	AGGAG	MKLEVAVRIGKGVDLTTIEECVNNIHSFSPQIFPYNKINEELTELYEEYDNYKKHPETWMEALCGMKA
Ga0208668_10026882	F042023	GAG	MNNMSSEKRVYICFLILVLVLASGCSTTRWEWMPNRDGLDPDVNKVALPDREELGGIEIDVLKISF
Ga0208668_10026887	F043614	N/A	MKNITLTFERKGSTVWSDGEDYYARYIHKPTMSKWEILWQYSQSGEHIGSIRKLVKTDEPIHWEYKWEYQGEVFRFKKLEQGLKVEIDLLESDETYESVSRALATPPPDISPGVPANFGLPLA