Scaffold Ga0209615_103766

Overview

Basic Information

• Taxon OID: 3300025075
• Scaffold ID: Ga0209615_103766
• Source Dataset Name: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - 4B3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 907
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002764	Metagenome	531	Y
F011742	Metagenome	287	N
F020138	Metagenome	225	Y
F042869	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209615_1037661	F020138	N/A	QQTNRLNAFWQDVEAHKALNPSLPESALVILKSVALDALLAAQDIEQIGVNDANN
Ga0209615_1037662	F011742	AGGAG	MQTIEFVPFEWEDDDFNPDIDRIEVDYEWHEADTSVGLLPHLEKTVKWMRDNKEFKDITDEMSYNDLSCLKYEIKRNDQEIASERTD
Ga0209615_1037663	F042869	AGGAG	VKELIDRNDTIKNYVPIGSLELKLAVARAEGYAIREDKTRYHHVVDGTVITSVDESKPTYYYYNNQPLPLLDPYRIAMEFYLKEKT
Ga0209615_1037664	F002764	AGGA	MKEPEDEAFDELSRRQGDWGLQGSRKHQIIRYAETNARNEVIEEVAQHIEKCSLAFGKDTIQSFTAYVRGMKK