Scaffold Ga0209615_100257

Overview

Basic Information

• Taxon OID: 3300025075
• Scaffold ID: Ga0209615_100257
• Source Dataset Name: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - 4B3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5581
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015204	Metagenome / Metatranscriptome	256	Y
F017819	Metagenome / Metatranscriptome	238	Y
F038210	Metagenome / Metatranscriptome	166	N
F065707	Metagenome / Metatranscriptome	127	Y
F077027	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209615_10025713	F065707	GAGG	MRPAIFSTENPPQPITCVETLEYVNGLRRRIEVQNDQMEQLAAQSHMLLGKVQHLTGEIEKLSLDLGIKNEEVPPGWQKVDQ
Ga0209615_10025715	F038210	N/A	MKIEKNIPLPGGVDPRERYPFPDMALGDSFLILDATWIKNLRSAAYMYSKRHPGTRFTCRRHGEGWRLWRVA
Ga0209615_1002574	F017819	N/A	MKKRSKYRPRTVLQNPLEFVLSGMKAVKDLPGIYLDVQLRNRSALDQIRKGEATKEDIDMLIGAFNVTEALATMGKGHDWLEEIHQGQDALLQLSRRGVANGMRFIMTAKQWEALKLVMDLHEEQLAHATVYDIEKAHDHVLAVLRQGKARAIVQTQKEAT
Ga0209615_1002576	F077027	GAG	MNFTMNIHRVKNIRLSAVRLNQANATHYATRDLIIETDEGNFELSLFSIYVNEDDDQELLEVKV
Ga0209615_1002579	F015204	AGGAG	MNFEDWWSQLTKFEQRAIGEHNAKFVWEECQKYTLMTLEDACKAQVAYDQGMKDGRERYEVHVAGWVLTPGMQPGMIWISDAGGEGGDFHIHELAEVIGKFYKEKF