Scaffold Ga0209615_100123

Overview

Basic Information

• Taxon OID: 3300025075
• Scaffold ID: Ga0209615_100123
• Source Dataset Name: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - 4B3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8483
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010821	Metagenome	298	Y
F042803	Metagenome	157	Y
F091631	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209615_10012318	F091631	AGGA	MKNMMKNEPKGYGTKATMAGNPKASDGTGEHGSAKKGIPAAKTNMTGADKAFDGGRSSGVCYTHDRKCSQ
Ga0209615_1001236	F042803	GGAGG	MLTDGDEGEFITYLIWDEVTVKWAWFEGEDHEMDGYFDIFVYKDGLDITYDIPKLNFKWIEEEVKKQAGYEPPSRHHVASVINGYFNKTF
Ga0209615_1001237	F010821	AGGAGG	MTDFTFSSTDFSATTILVVANTTDAKDYLAQRYGVGCISIEIRKSAAPEIADSFEFQGLSYA