Scaffold Ga0209615_100023

Overview

Basic Information

• Taxon OID: 3300025075
• Scaffold ID: Ga0209615_100023
• Source Dataset Name: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - 4B3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15744
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (80.65%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012670	Metagenome / Metatranscriptome	278	Y
F040590	Metagenome	161	Y
F099270	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209615_10002312	F012670	GAGG	MFDEIRPEGSMVSTEDKKAKARAAWAQKKALKIATGEIIPEIKPSANPAGRPKSIVNRVTEYGALFNKLNEERLSKGLSPLKTAMEVLIDAMQSDEIDIKDKARIADKLAPFESSRAPIISIEHVQNISKDEEVSADEALDDFLMAIRKV
Ga0209615_10002313	F001915	AGGA	MKWNLAHPLKDVQDIIEMGLDNLSHEENGILNASVDVFRKCLTVTATVQLFDKSKELLAVCRTDDERLLGYCWFDRGGYTTYSKDEISNAKFHHVDLSLPVRLRVRLINEMIDQHILWANLWGIPVVCSTSIRSEHDGFMRIHKKRGFKVSGSYAWIRTEEGIKCLMK
Ga0209615_1000232	F003521	AGG	MKSLVLNIRDFFNRRTRVEDAKKEANVNRRTLVIENGECASRLMRNEDFALLFNLYRFNLLERLEDCRTDLERIDNAHDVAGVRDFIAFIEKTEYLGKVAIKTNT
Ga0209615_1000233	F004695	N/A	MLDRQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDSEQAVQATEMVKYMINSKNDSYQIIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETLAAEKGLTVKRQNMKKIDVDLAGVAQEMMAPEEFDSTPSSPQEDINGAINANTIYRAKYKMTGFSTSVRIKHVAQHYFVCNPTISGIQDQDFVGFYDPMTIHECKAQFPYVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWLRKDVDNDGEEEIVEVCFSGSYVLYVKEVDFIPLASMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQASTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDSTKHVFEFAPMQGNLAYVQSSMQRFEADKMAMIGMTSPGDVLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLKSVIYIVWKTLIQYADDYNIQQLANVCAKGKPFMDAESMNNYEFIDRKLINIDLALGFMSDENRLTRQQLIVQSQQAFAQTMMQLDPSVPELFAKVRRPFEDTLRVLGVKDVDSYLPTIEEAAKMMQVKSQQPTSPEHDEIISRTALNKAKAEETAANTLFTQKKAEDIDTDNMFEALAAKRGKLTAVQVD
Ga0209615_1000235	F006264	N/A	MEEPTNLFRQKLPAQSEVCARKALEWLQKDLQHEHDLNPQEIYYLACAAQILLGMRDFYGQK
Ga0209615_1000236	F001059	AGG	MATYDIEALKADLPTAKELAQFVYDKTQISLDFIGKPKGDQYQVAKNALEGKKFPSEYMTELNPYLDKKELIPEDNIKPLPPRSEDLPPEDARVHFFGATNMPHPTDPQSDRKVQINFRKYDNGAITFQITGPLEKIAIGERVNKFGQKQPEKYSWLDPRTPETLMRRPDGTFTEKGRGLYAYCNGEKGSGIWPLIDRDLTNFTQKNVTDPWA
Ga0209615_1000237	F040590	N/A	MSYGTVISGGARMTKGLTKGINDKLAGFAEGHKMSATLANSVRNTFNQNPLSDQHLNNINVAAAKKFTTPKLPAKI
Ga0209615_1000238	F099270	AGGA	MNTNFLYAQAPNRKGNMSKHLPSKSGGSTNITNEKHGTATPTGNQGAPKATGNIASRNQKLMVSTHADYCGTIKNDGYMDKSVKNYLG