Scaffold Ga0209615_100001

Overview

Basic Information

• Taxon OID: 3300025075
• Scaffold ID: Ga0209615_100001
• Source Dataset Name: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - 4B3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34459
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002986	Metagenome / Metatranscriptome	515	Y
F009516	Metagenome	316	Y
F025684	Metagenome	200	Y
F077224	Metagenome	117	N
F100671	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209615_10000126	F009516	GAG	MFYPMGTLAVGDVGTMPATDKGAAKRTSRNVSQYGIRNGKCFMCRTINGVTFITRLG
Ga0209615_10000128	F100671	GAGG	MAKEIKYRIDPKTGRPLHLLGDLAVVLNDDGSTVTEHYDENGRLYRTSYKSVPYPKDWTP
Ga0209615_10000129	F025684	GGA	MIDDDDALPDRYTERAEATLAYRLMEYLESLGVINADHVAYLRWPPIELIEDAEAALKDE
Ga0209615_10000144	F077224	N/A	MKPTNEWSPEELLRFIVGIVLSLTLTFIVATVLYSLVFVSQPMEGQSPNDAEFFKLINPIATFIVGALAGLMAGQGNGGMKKKPPEKGECDELPK
Ga0209615_10000146	F002986	N/A	MATIDETQAQLNTHEQVCTFRYESICARLKRLEAVGMSVAGTIILLLIGILIKAG