Scaffold Ga0208920_1098230

Overview

Basic Information

• Taxon OID: 3300025072
• Scaffold ID: Ga0208920_1098230
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 538
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015325	Metagenome / Metatranscriptome	255	Y
F087315	Metagenome	110	Y
F093698	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_10982301	F093698	N/A	KAFISKNGVVCFIYWDLDATPDEKGLQWRMAKNPMTIKATQTIQG
Ga0208920_10982302	F015325	AGG	MTKKIWLVIEKNTYGENTHSYNISKTADTIEQATKYKVHLDALNDSKKKAYFLASDISTVIDKVVYHHNKSVEEKPLVLTDEVKDTSSEMPF
Ga0208920_10982303	F087315	N/A	MIDYNLVLYFGIGLIVFGLVLFFISIHFERQAEIKLFKL