Scaffold Ga0208920_1062160

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208920_1062160

Scaffold Ga0208920_1062160

Overview

Basic Information
Taxon OID	3300025072 Open in IMG/M
Scaffold ID	Ga0208920_1062160 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	729
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-16.21	Long. (^o)	-76.61	Alt. (m)		Depth (m)	105
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012033	Metagenome	284	Y
F015480	Metagenome	254	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_10621602	F012033	AGGAG	MERKLSYQKDYNFPGNIYFEYVGNITEDGAMKLQERVGYHPAGYGFYEFACINNVARWNCSNSCD
Ga0208920_10621603	F015480	AGGAG	VIVPTLENMYISEHIENTYAQIIAEEDIGEDYGKEAIISERLQFPRQHIL

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