Scaffold Ga0208920_1020409

Overview

Basic Information

• Taxon OID: 3300025072
• Scaffold ID: Ga0208920_1020409
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1431
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005524	Metagenome	398	Y
F024648	Metagenome	205	Y
F073421	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_10204092	F024648	AGGA	MCEYHLYPGDMFRTKAGLGLIVKKSGGYFTYSNVGDDQKKAYPTIETKRFYSYCDDMSHGQILEVILLPNRKYRRKRK
Ga0208920_10204093	F005524	GAG	MDIGDKVQHFGTGSIGTVIDSSYEVETPFQQQLNVQWEDDLAPHKDSWERRNDLSIVEIPVYDFNISK
Ga0208920_10204094	F073421	GGAGG	MGYRSHVVLAISKHLTPFFMMKLSQNKEAEELVFKHADEFDRDYQGDKSWLIRFDSIKWYDSYDDIITLENFIQEASSDEYEFEIAGVEQSSAEHIRFVRVGEESTDIEMTGDGFWDIYPHTSISY