Scaffold Ga0208920_1015600

Overview

Basic Information

• Taxon OID: 3300025072
• Scaffold ID: Ga0208920_1015600
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1668
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012033	Metagenome	284	Y
F015480	Metagenome	254	Y
F071130	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_10156002	F012033	AGGAG	MERKLSYQKEYTSPGNINFKYVGNITEDDAMMLQQKAGYHPAGYGFYGFACINGVARWNCDNNCD
Ga0208920_10156003	F015480	AGGAG	VNLPTLENMHISEKVENIYAQIIAEEDIGEDYGKKAIISERIHKSGQYQL
Ga0208920_10156005	F071130	AGGAG	MSIGIKHTKTEQRKIVNRAFGLVRNGHSITSARKTVAKEIGVSPNTLWVWQDKFGMTTPKVIKTTDLVKNNGVRKTVKLTTATSTAAIKGLESMKGQLGVVFTSLVNQDGRFSNTDATAISGVANVILGSCKQVLLERKALNTVAKTEHLS