Scaffold Ga0208920_1005230

Overview

Basic Information

• Taxon OID: 3300025072
• Scaffold ID: Ga0208920_1005230
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3047
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020018	Metagenome	226	Y
F023118	Metagenome	211	Y
F042373	Metagenome	158	Y
F062817	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_10052303	F042373	N/A	MCRITKIQEAYIWGNFAIPPEHPYEEQRICKKCAVKEHGKKNKRKLNDIINERTNQWLKK
Ga0208920_10052306	F023118	AGTAG	MSGGRLKALQDMFKRVLLENVELKRKVRVLEEILRSYIPILKRRKDDK
Ga0208920_10052308	F062817	AGG	MRDKMMEEADWKDGMNVFRSRVIEQLDGILQVLDILEKEIAIIKQKTKGEPQ
Ga0208920_10052309	F020018	GGA	MIQITKWLNPEDETWYKGTYITILEWLVIKKEHIAKLTGKVTTIRTNSDGAKAVFRQRIK