Scaffold Ga0208920_1004183

Overview

Basic Information

• Taxon OID: 3300025072
• Scaffold ID: Ga0208920_1004183
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3439
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000567	Metagenome / Metatranscriptome	1020	Y
F009536	Metagenome / Metatranscriptome	316	Y
F013896	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_100418310	F000567	N/A	MRKQLLKITQKITTWHEGMFKYLTLKSKTSMFFTWLLVFICLYEIFEHIFIPLFLIWWGF
Ga0208920_100418311	F013896	GGTGG	MICDKCNGNGFTLVKGETIQCKKCLSSGEIKETLTPPKYSDDDLTNIYQTLYEASLKLSESNDPGMVAASLMAIGSRIYKTILTPEDYDNMMKKILETDVQPFKKETLQ
Ga0208920_10041839	F009536	N/A	MKKDVMKQALELMSGELKEEIKKNLENSKSYTRLFVKILEEIDKMKVVPPKFATLKNSILEINKKNHSKVTDDIKHYVPKTQFTVSPKDIDYWLQTAKKKDQLIYYTGGTFDKRSVKDESVFRKARNLAMDYDNIPFKNKKYQYRGSIKGEWGCNYKNIITLVQKKVAKEQRDTIWDEDKKEYVPGNIISYPIYNYIIIKQ