Scaffold Ga0208920_1002376

Overview

Basic Information

• Taxon OID: 3300025072
• Scaffold ID: Ga0208920_1002376
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4653
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008105	Metagenome / Metatranscriptome	339	Y
F014794	Metagenome / Metatranscriptome	260	Y
F018622	Metagenome	234	Y
F018815	Metagenome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_10023762	F018815	N/A	MNISIEKVTNFLKPLLLQNIIIKTDKKILKRGKLKIFQVKQYYINFTLEYKDSIKSYEIPYPYKMNWDEETAILNYHLSSFIPFRQINRVKFLDSSSKSKLYDSLMYILPSEESSL
Ga0208920_10023763	F018622	GGA	MLIQKAALDSILLNNVCEIRFARRIIKPGQAATRRMLCTKSLSLLNSVNGRISLNYFPPKGPPKPYLGPDHLAVAWDILMQNYRNINMNQCDLVQEIPANDDFWIYFNENIYPMSAAQKLNFMNS
Ga0208920_10023764	F014794	N/A	MAMASIDNLAPTRSLIDLSNPDKGDFGIDDFELSFVFDDILLIEYVDETAEGEVKRNGIVVPTNALTKAWRKGKVILTGPDVKYTKEGDIVIFPNNMGVTISGVTVTGKGNILKGIFLNEERMFGICKQKDVNTKSSS
Ga0208920_10023765	F008105	N/A	VNFFQLQNKLFYSKKDAAGDLDTEGEQNFVPFLFNRWLSFYNNDMCVFTNETLNRFSTIFDDKQQSYRLYYYLIPRLKWKKITYIKKRKREESEEDDIALIAKNKNISKRELLQYVELSKSLSK