Scaffold Ga0208920_1002231

Overview

Basic Information

• Taxon OID: 3300025072
• Scaffold ID: Ga0208920_1002231
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4825
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008649	Metagenome / Metatranscriptome	330	Y
F016323	Metagenome	248	Y
F023958	Metagenome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_100223111	F008649	N/A	MIKGENNKMTELETLMLDVTNTLNHNGFDEVKAVPNNTQFSIRVGYWDRISASLIETMEEYHSIRITEHDWEDEDCGTLYRYLVEPVDENSGYTLNELNELDSHYTEEALYLESVGADDCWGVA
Ga0208920_10022315	F016323	GGAG	MPGSKKLIDIIDEMNWKETTTNKMVTEKLNRLSKLIFDIDGFNGDADFVSKIMEDLIESPHHRITKLEIEKCNRLFKQYKEQIK
Ga0208920_10022318	F023958	AGGAG	LLQVELAQLTDLIKAYDMIVTAKSSGLDFWEGFILILFILKDVAIVGGILGTIIWYIKGK