Scaffold Ga0208920_1001096

Overview

Basic Information

• Taxon OID: 3300025072
• Scaffold ID: Ga0208920_1001096
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6889
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Hahellaceae → Hahella → Hahella ganghwensis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011408	Metagenome / Metatranscriptome	291	Y
F013189	Metagenome / Metatranscriptome	273	Y
F050757	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_10010964	F050757	GAG	MTKKNGITEYSWSELCYKIDPALSAPEKVYVFDNGNKVFYKARKRINVKHGNRKSR
Ga0208920_10010965	F013189	AGGA	MEIEKAAKFVSQEHTLAKNVAEHLEKKYPNWAWAVHVMDGLVVVKSMRLSGNWGFVLHEDKIDNDYLAVTRAGGEILERYRQKTNGFNVNQDRYADLEMNVRGQLNGDFS
Ga0208920_10010967	F011408	AGGA	MDYYDPTDVNIDELIKRVRVGRSTEELIRTPTGSSIVNRATQDYRNGLEALQKMAMQEWVGSSEEELQQYRKISNNLATPLKLLHWLDAILTDGENAESIARYKDTGEI