Scaffold Ga0208920_1000970

Overview

Basic Information

• Taxon OID: 3300025072
• Scaffold ID: Ga0208920_1000970
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7315
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008105	Metagenome / Metatranscriptome	339	Y
F014794	Metagenome / Metatranscriptome	260	Y
F018622	Metagenome	234	Y
F018815	Metagenome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_10009704	F018815	N/A	MNNCLENVIEHLKPFLLKDIIIRTDKKILKRGRLKIFQIKQYYINLSLEYKNSIKNYEIPYPFDIHLEQDETEAVLNYHLSSFIPISQLNKVKCLNTSSKTKIYNNLVYIWPSEETTV
Ga0208920_10009705	F018622	N/A	MIVQKATLDPLLQTHVCEVRFPRRIQKPGLALTRRMLCTNSIQLLNSVNGRISLNYFTPKGPPKAYLGPDDLAVAWDILIQDYRNINMRSCNLIQEIPANDDFWEYFNENIYPMSAKQKFDFMNS
Ga0208920_10009706	F014794	N/A	MAMASIDNLAPTRSLIDLSKPDKGDFGIDDYELSFIFDDILLIEYADETKEGEIERNGVLIPTNALNKAWRKGKVILAGPDAKYAKEGDIVIFPNNMGVTINGVGITGKGKVKTGVFLNEERMFGICKKKDDSPKSDS
Ga0208920_10009708	F008105	N/A	MNFFQVQNKLFYSKKDDAGYLDTEGEQSFVPFLFNRWLSFYDNNMSVFVNETFNRFGNIFDNKQESYKLYYHLIPRLKWKKISYIKKKKKEEQEIDLTAIAKNRNMSVRELKMYVENYE