Scaffold Ga0208920

Basic Information
Taxon OID	3300025072 Open in IMG/M
Scaffold ID	Ga0208920_1000545 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025072 Open in IMG/M

Scaffold ID

Ga0208920_1000545 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9681
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (6.25%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9681

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (6.25%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-16.21	Long. (^o)	-76.61	Alt. (m)	Depth (m)	105
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-16.21

Long. (^o)

-76.61

Alt. (m)

Depth (m)

105

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F017223	Metagenome	242	Y
F026716	Metagenome	197	Y
F066235	Metagenome	127	Y
F090264	Metagenome	108	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_100054512	F066235	N/A	MKEDHDQNSIEDEELREMVERALKDNIKDRKTFKRRQDLATRLSHILCEYLDSYILLGYDFNGNHLDLRAANTPQKNEALNSFLLKYFATEVHSIKGIPPRPDELL
Ga0208920_100054513	F026716	GAG	MNCCKKHIYAIETGDYVGQMFAVVDIHKSFIGCLSLPSMKNIKVPTESFESGRNSDIIKFVEELPEDVYSVIEAQYNKNENSDNRRQQLNTPNVLYSKSPVEKDQYTHGVPGK
Ga0208920_100054515	F017223	N/A	MISLPEDFVILKFFELGLYPKYNKFNNVYHCSCPICREGKSLGKKRRCYYIPKNENIFCHNCGWSGKPLRWIKEVSNSSDEEIIKELKEHIPSAEDIIEKDEKTKPTFKVETLPKDSINLSDKFQLDYYDSNNIVRAVRHLITERRLDTAVNKPEVLYVSLTDMVHKNRLIIPFFNERDEIEFYQTRTVLNKDKKTKPKYLGKINAEKTLFNIDRISSDHDCVYIFEGPINACFTKNSVAVAGITERGKSFTQRQEEQLNTRLKFFDKTWILDSQWVDQAALVKSEALLKQGERVFIWPEKFGKRFKDFNDIAIACKIDEIKWKFIEKNTFDGIKGIVKLSEIKKYRNQTYLN
Ga0208920_10005457	F090264	N/A	MITEKEKSIYNSHLYASRKAKNKPVRLRQNFDNIESKDEVALKKLNLLLSKYTHINYSDFFIAPYKIYGPDNYFDLTFFNTRKAIRCYSLYCKDKEVQDPDSEESIDTLKKGLKFIYNYCYDKKITLTEYKTYVPETGAQISREGATPEIFWHLKDHKINFYTLHAFDMDGVVKNKDREIFDWFIKDFTDLYSKTRVKFVSSKSLKEKAKKGIEIIQQKLLKFSV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208920_1000545

Overview

Ecosystem & Geography

Associated Families

Sequences