Scaffold Ga0208920_1000382

Overview

Basic Information

• Taxon OID: 3300025072
• Scaffold ID: Ga0208920_1000382
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11785
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028316	Metagenome / Metatranscriptome	192	Y
F033600	Metagenome / Metatranscriptome	177	Y
F105495	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_100038211	F105495	AGG	MHLPRVPRAIVGPSGDTVRPVIKNITIDGEIRVEAHYTDPRTGQFITKIPISVTKIDDK
Ga0208920_100038215	F028316	N/A	VKKTPKNKNFDNLLKTSITAAEDISNGNEQGLSVMNDYLAEYLKSFVLLGYDTKGESVVILSGKTAQDYDSLETLLRRVGNIDFFNNIQEEKDKDI
Ga0208920_10003827	F033600	N/A	MMKGILFEDLYMYTNKYWKDVKSRHVRPTTKTLADIAKSSPETYNKVKADLVPFPGDHAVEQLGSAFKSISDATYLLNQLFENPTVRSDEKTKLSVNKKLQKIQDIIKSVADDLDHDGANNS