Scaffold Ga0208920_1000330

Overview

Basic Information

• Taxon OID: 3300025072
• Scaffold ID: Ga0208920_1000330
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12603
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028316	Metagenome / Metatranscriptome	192	Y
F033600	Metagenome / Metatranscriptome	177	Y
F035326	Metagenome / Metatranscriptome	172	Y
F072246	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_100033018	F028316	N/A	MKKPTPKRRNFDSLLKSNINAIESTDINEQDMSSINDYLIEHLKSFILVGYDIRGDSVLLISGKTPQDYDAIETLLRRVSSLDFFKDIQEQTNTKNE
Ga0208920_100033019	F035326	N/A	MKNKVTTCGYFIKRLRDNGYTVNRIFSDYSSQDPRRWTIMVNPEIAALYITCYVNYDWSGDFKFELHDGNHFKNFQLRTDSMEVIITKLIEKDITPNEETNT
Ga0208920_10003307	F072246	N/A	MINKPTTRDYSPLARWLCLFEAVNIIADKAEKMGHTADCLKPIPINKYINERFHSVLKDVEYEFSNSHHTRHR
Ga0208920_10003309	F033600	N/A	MMKGILFEDLYKYTNKYWKDVKSRHVRPTTKTLADIAKASPDTYNRIKADLIPFPGDHLIEQLGSAFKNISDATYLINQLADNPAVHLDKKIVKSATFKLQKIQDLIKSVSEDLDHDESD