Scaffold Ga0208920_1000192

Overview

Basic Information

• Taxon OID: 3300025072
• Scaffold ID: Ga0208920_1000192
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16701
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (9.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026406	Metagenome	198	N
F044200	Metagenome	155	Y
F068141	Metagenome	125	Y
F076604	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_100019215	F026406	N/A	MKNSVVFEGGIDKVSTLADGSLRVYVGTPELSNETMVSVFSLIKKPGFVLISANAINQDQIDAVEKATTNAEFSEKTPSQRMRGVLYKLWEKTQPKTMNGDGEMEYVDFDLFYKRQMNKIIDHFKTKLD
Ga0208920_100019221	F044200	N/A	MKVLPFDLDVTTTQRAKGEKVEYITPGAYECKITGITTSDQLDEYKGSPFIQYAVTSNGRIGRCRFWAVKQTDKPSTQEWKKKQMKEFLVNAGVKDFKDDSKAMNDAVGKSLMITFISEEYIGVNRDTQEPVIREATKYRWSAKEGEKCTYNNSMNQILKEVDMEEFRRRHSDWTKANDIVNSNTEIDDSLPF
Ga0208920_100019224	F068141	N/A	MGIFTIALFTAIGYYIILYKSIGKKRLAKTQTFWDLLFTIGVPVLFIGTFSGLATAVIAGVIFSIFTSMTPKN
Ga0208920_100019227	F076604	N/A	MNEVTTCCGSSYEYSWISDCCTMEMYADSDICPACKEHAEATGYICNECGNWTEELEEQIEYEERIRENALEERADAHRKYGE