Scaffold Ga0207896_1016184

Overview

Basic Information

• Taxon OID: 3300025071
• Scaffold ID: Ga0207896_1016184
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1309
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018081	Metagenome	237	Y
F063082	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207896_10161843	F063082	AGG	MTQYKDVVETQQKKLKEEKDLNTSVSIGWQREELGKPHVVRHKGFKDRVEFEYSDKRKKPHTEWK
Ga0207896_10161844	F018081	GGAG	MKHFNNRKFSLFNHMCDILFEFYERNGLEHMCALEAQMSGNYKTEDQKEWLERFCNVLDRVENRR