Scaffold Ga0207896_1007464

Overview

Basic Information

• Taxon OID: 3300025071
• Scaffold ID: Ga0207896_1007464
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1977
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008386	Metagenome	334	Y
F013576	Metagenome	270	Y
F020447	Metagenome	224	Y
F064087	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207896_10074641	F064087	N/A	NRTTIKETIISNLVKEVVSKGGDKNVIIDKLSTLPRSTLSKALNEKDNPFYVKQAMIVQDSKGNGALVDLPRNIMNDIRKKSHFGYQQKVSKTKRDHDRKIKSKDLLRSDSKD
Ga0207896_10074644	F008386	GAGG	MSSEKQLILIILVGVFILIYQYIKDEKKKHDEKKQRHLSKYFDSKW
Ga0207896_10074647	F013576	AGGAG	MFNDIKKEIDDTLDHLNPFENICSDGYTGNNILPNHVKKFIADKKATQKEQELVDNYIDEIKLNKGEK
Ga0207896_10074648	F020447	N/A	MIKQIMIVSILTAIVLFLGYLSIEYLISQLINDIFAIMENK