Scaffold Ga0207896_1006408

Overview

Basic Information

• Taxon OID: 3300025071
• Scaffold ID: Ga0207896_1006408
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2138
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001740	Metagenome / Metatranscriptome	643	Y
F004520	Metagenome / Metatranscriptome	434	Y
F004850	Metagenome / Metatranscriptome	421	Y
F034346	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207896_10064083	F001740	N/A	MYNPNNPSNWSWSKAFQEVEDTVNQAELTQQSINHVLNYPGEANGVFMTLSKNQQDDVYDILNQIL
Ga0207896_10064085	F004850	N/A	MKQIIEYPQEIFEFEIHYGECEEPLYLTNDKNYICDDMSDYMEELGIIMEEVIYKVKVI
Ga0207896_10064087	F034346	N/A	MIKAIKLIAIKAVEEKMLKIYATIMTSIFLCIWIPTMAIVLKQIFTEVILPIFK
Ga0207896_10064088	F004520	N/A	MKITNEEKDEITWRVVDSLYEKLANELEYELENHNDFTETNNAYMDLFNEMTIKIVKYMRSELFQPMTNEDLKQ